Mapping Stats¶

Bowtie2 Mapping stats¶

reads; of these:
(100.00%) were unpaired; of these:
(9.57%) aligned 0 times
(2.51%) aligned exactly 1 time
(87.91%) aligned >1 times
43% overall alignment rate


reads; of these:
(100.00%) were unpaired; of these:
(6.01%) aligned 0 times
(1.92%) aligned exactly 1 time
(92.07%) aligned >1 times
99% overall alignment rate



156420 reads; of these:
  156420 (100.00%) were unpaired; of these:
(7.81%) aligned 0 times
(2.22%) aligned exactly 1 time
    140730 (89.97%) aligned >1 times
19% overall alignment rate


reads; of these:
(100.00%) were unpaired; of these:
(6.54%) aligned 0 times
(2.24%) aligned exactly 1 time
(91.21%) aligned >1 times
46% overall alignment rate


reads; of these:
(100.00%) were unpaired; of these:
(7.78%) aligned 0 times
(2.70%) aligned exactly 1 time
(89.52%) aligned >1 times
22% overall alignment rate



reads; of these:
(100.00%) were unpaired; of these:
(6.74%) aligned 0 times
(2.17%) aligned exactly 1 time
(91.09%) aligned >1 times
26% overall alignment rate


129157 reads; of these:
  129157 (100.00%) were unpaired; of these:
(7.86%) aligned 0 times
(3.03%) aligned exactly 1 time
    115099 (89.12%) aligned >1 times
14% overall alignment rate



reads; of these:
(100.00%) were unpaired; of these:
(10.16%) aligned 0 times
(2.95%) aligned exactly 1 time
(86.90%) aligned >1 times
84% overall alignment rate



reads; of these:
(100.00%) were unpaired; of these:
(7.74%) aligned 0 times
(2.30%) aligned exactly 1 time
(89.96%) aligned >1 times
26% overall alignment rate



reads; of these:
(100.00%) were unpaired; of these:
(10.25%) aligned 0 times
(2.90%) aligned exactly 1 time
(86.85%) aligned >1 times
75% overall alignment rate



reads; of these:
(100.00%) were unpaired; of these:
(6.80%) aligned 0 times
(2.40%) aligned exactly 1 time
(90.79%) aligned >1 times
20% overall alignment rate



reads; of these:
(100.00%) were unpaired; of these:
(6.78%) aligned 0 times
(2.31%) aligned exactly 1 time
(90.92%) aligned >1 times
22% overall alignment rate



113312 reads; of these:
  113312 (100.00%) were unpaired; of these:
(10.75%) aligned 0 times
(3.91%) aligned exactly 1 time
(85.34%) aligned >1 times
25% overall alignment rate



reads; of these:
(100.00%) were unpaired; of these:
(8.84%) aligned 0 times
(2.47%) aligned exactly 1 time
(88.69%) aligned >1 times
16% overall alignment rate




reads; of these:
(100.00%) were unpaired; of these:
(7.63%) aligned 0 times
(2.50%) aligned exactly 1 time
(89.87%) aligned >1 times
37% overall alignment rate



103803 reads; of these:
  103803 (100.00%) were unpaired; of these:
(5.15%) aligned 0 times
(1.82%) aligned exactly 1 time
(93.03%) aligned >1 times
85% overall alignment rate



reads; of these:
(100.00%) were unpaired; of these:
(7.28%) aligned 0 times
(2.54%) aligned exactly 1 time
(90.17%) aligned >1 times
72% overall alignment rate



reads; of these:
(100.00%) were unpaired; of these:
(10.80%) aligned 0 times
(3.52%) aligned exactly 1 time
(85.68%) aligned >1 times
20% overall alignment rate



123630 reads; of these:
  123630 (100.00%) were unpaired; of these:
(7.93%) aligned 0 times
(2.27%) aligned exactly 1 time
    111016 (89.80%) aligned >1 times
07% overall alignment rate
reads; of these:
(100.00%) were unpaired; of these:
(8.08%) aligned 0 times
(2.65%) aligned exactly 1 time
(89.27%) aligned >1 times
92% overall alignment rate



126214 reads; of these:
  126214 (100.00%) were unpaired; of these:
(10.92%) aligned 0 times
(3.18%) aligned exactly 1 time
    108421 (85.90%) aligned >1 times
08% overall alignment rate
152413 reads; of these:
  152413 (100.00%) were unpaired; of these:
(8.56%) aligned 0 times
(2.29%) aligned exactly 1 time
    135883 (89.15%) aligned >1 times
44% overall alignment rate



106007 reads; of these:
  106007 (100.00%) were unpaired; of these:
(12.41%) aligned 0 times
(2.67%) aligned exactly 1 time
(84.92%) aligned >1 times
59% overall alignment rate
133590 reads; of these:
  133590 (100.00%) were unpaired; of these:
(10.02%) aligned 0 times
(2.92%) aligned exactly 1 time
    116303 (87.06%) aligned >1 times
98% overall alignment rate



reads; of these:
(100.00%) were unpaired; of these:
(8.59%) aligned 0 times
(2.77%) aligned exactly 1 time
(88.65%) aligned >1 times
41% overall alignment rate



123896 reads; of these:
  123896 (100.00%) were unpaired; of these:
(13.85%) aligned 0 times
(3.67%) aligned exactly 1 time
    102183 (82.47%) aligned >1 times
15% overall alignment rate




reads; of these:
(100.00%) were unpaired; of these:
(7.19%) aligned 0 times
(2.29%) aligned exactly 1 time
(90.52%) aligned >1 times
81% overall alignment rate



163130 reads; of these:
  163130 (100.00%) were unpaired; of these:
(9.84%) aligned 0 times
(2.29%) aligned exactly 1 time
    143348 (87.87%) aligned >1 times
16% overall alignment rate



reads; of these:
(100.00%) were unpaired; of these:
(7.93%) aligned 0 times
(2.45%) aligned exactly 1 time
(89.62%) aligned >1 times



07% overall alignment rate
reads; of these:
(100.00%) were unpaired; of these:
(8.27%) aligned 0 times
(2.39%) aligned exactly 1 time
(89.34%) aligned >1 times
73% overall alignment rate




246208 reads; of these:
  246208 (100.00%) were unpaired; of these:
(7.78%) aligned 0 times
(2.24%) aligned exactly 1 time
    221533 (89.98%) aligned >1 times
22% overall alignment rate



138496 reads; of these:
  138496 (100.00%) were unpaired; of these:
(7.69%) aligned 0 times
(2.67%) aligned exactly 1 time
    124140 (89.63%) aligned >1 times
31% overall alignment rate



reads; of these:
(100.00%) were unpaired; of these:
(8.75%) aligned 0 times
(2.77%) aligned exactly 1 time
(88.48%) aligned >1 times
25% overall alignment rate



154670 reads; of these:
  154670 (100.00%) were unpaired; of these:
(8.66%) aligned 0 times
(2.64%) aligned exactly 1 time
    137180 (88.69%) aligned >1 times
34% overall alignment rate
reads; of these:
(100.00%) were unpaired; of these:
(6.21%) aligned 0 times
(2.67%) aligned exactly 1 time
(91.12%) aligned >1 times
79% overall alignment rate